The following packages will be installed: HMMER Fetching HMMER.SlackBuild... 0%100%100%100%100%100%Done Fetching HMMER.info... 0%100%100%100%100%100%Done Fetching README... 0%100%100%100%100%100%Done Fetching slack-desc... 0%100%100%100%100%100%Done hmmer-3.3.2/ hmmer-3.3.2/documentation/ hmmer-3.3.2/install-sh hmmer-3.3.2/configure.ac hmmer-3.3.2/tutorial/ hmmer-3.3.2/INSTALL hmmer-3.3.2/libdivsufsort/ hmmer-3.3.2/LICENSE hmmer-3.3.2/test-speed/ hmmer-3.3.2/configure hmmer-3.3.2/testsuite/ hmmer-3.3.2/config.guess hmmer-3.3.2/README.md hmmer-3.3.2/Userguide.pdf hmmer-3.3.2/config.sub hmmer-3.3.2/.gitignore hmmer-3.3.2/profmark/ hmmer-3.3.2/makeTAGS.sh hmmer-3.3.2/RELEASE-3.3.2.md hmmer-3.3.2/easel/ hmmer-3.3.2/Makefile.in hmmer-3.3.2/.travis.yml hmmer-3.3.2/src/ hmmer-3.3.2/src/itest_brute.c hmmer-3.3.2/src/p7_hmmd_search_stats.c hmmer-3.3.2/src/p7_gmx.c hmmer-3.3.2/src/hmmdutils.c hmmer-3.3.2/src/hmmd_search_status.c hmmer-3.3.2/src/hmmpgmd_client_example.pl hmmer-3.3.2/src/hmmdwrkr_shard.c hmmer-3.3.2/src/cachedb_shard.h hmmer-3.3.2/src/p7_tophits.c hmmer-3.3.2/src/generic_fwdback_banded.c hmmer-3.3.2/src/hmmscan.c hmmer-3.3.2/src/modelconfig.c hmmer-3.3.2/src/p7_gmxchk.h hmmer-3.3.2/src/generic_stotrace.c hmmer-3.3.2/src/generic_null2.c hmmer-3.3.2/src/p7_alidisplay.c hmmer-3.3.2/src/impl_sse/ hmmer-3.3.2/src/evalues.c hmmer-3.3.2/src/hmmemit.c hmmer-3.3.2/src/p7_gbands.c hmmer-3.3.2/src/p7_hmmcache.h hmmer-3.3.2/src/emit.c hmmer-3.3.2/src/p7_gmxb.c hmmer-3.3.2/src/hmmpress.c hmmer-3.3.2/src/hmmbuild.c hmmer-3.3.2/src/cachedb.h hmmer-3.3.2/src/alimask.c hmmer-3.3.2/src/nhmmscan.c hmmer-3.3.2/src/hmmpgmd.c hmmer-3.3.2/src/p7_prior.c hmmer-3.3.2/src/p7_scoredata.c hmmer-3.3.2/src/generic_fwdback_chk.c hmmer-3.3.2/src/impl_vmx/ hmmer-3.3.2/src/tracealign.c hmmer-3.3.2/src/hmmpress.itest.pl hmmer-3.3.2/src/p7_builder.c hmmer-3.3.2/src/p7_bg.c hmmer-3.3.2/src/hmmpgmd_shard.h hmmer-3.3.2/src/hmmer.h hmmer-3.3.2/src/p7_hit.c hmmer-3.3.2/src/seqmodel.c hmmer-3.3.2/src/generic_decoding.c hmmer-3.3.2/src/hmmalign.c hmmer-3.3.2/src/fm_alphabet.c hmmer-3.3.2/src/generic_viterbi.c hmmer-3.3.2/src/h2_io.c hmmer-3.3.2/src/fm_sse.c hmmer-3.3.2/src/p7_domaindef.c hmmer-3.3.2/src/generic_fwdback_rescaled.c hmmer-3.3.2/src/p7_spensemble.c hmmer-3.3.2/src/cachedb_shard.c hmmer-3.3.2/src/hmmdmstr.c hmmer-3.3.2/src/p7_hmmwindow.c hmmer-3.3.2/src/p7_hmm.c hmmer-3.3.2/src/nhmmer.c hmmer-3.3.2/src/fm_general.c hmmer-3.3.2/src/hmmdwrkr.c hmmer-3.3.2/src/generic_msv.c hmmer-3.3.2/src/hmmsim.c hmmer-3.3.2/src/fm_ssv.c hmmer-3.3.2/src/hmmlogo.c hmmer-3.3.2/src/build.c hmmer-3.3.2/src/makehmmerdb.c hmmer-3.3.2/src/jackhmmer.c hmmer-3.3.2/src/p7_pipeline.c hmmer-3.3.2/src/generic_optacc.c hmmer-3.3.2/src/modelstats.c hmmer-3.3.2/src/p7_config.h.in hmmer-3.3.2/src/hmmc2.c hmmer-3.3.2/src/heatmap.c hmmer-3.3.2/src/logsum.c hmmer-3.3.2/src/hmmstat.c hmmer-3.3.2/src/generic_fwdback.c hmmer-3.3.2/src/p7_gmxchk.c hmmer-3.3.2/src/phmmer.c hmmer-3.3.2/src/hmmsearch.c hmmer-3.3.2/src/generic_vtrace.c hmmer-3.3.2/src/mpisupport.c hmmer-3.3.2/src/cachedb.c hmmer-3.3.2/src/hmmpgmd.h hmmer-3.3.2/src/p7_gmxb.h hmmer-3.3.2/src/p7_null3.c hmmer-3.3.2/src/p7_trace.c hmmer-3.3.2/src/p7_hmmcache.c hmmer-3.3.2/src/p7_gbands.h hmmer-3.3.2/src/hmmerfm-exactmatch.c hmmer-3.3.2/src/Makefile.in hmmer-3.3.2/src/eweight.c hmmer-3.3.2/src/hmmpgmd2msa.c hmmer-3.3.2/src/hmmer.c hmmer-3.3.2/src/hmmpgmd_shard.c hmmer-3.3.2/src/p7_profile.c hmmer-3.3.2/src/hmmdmstr_shard.c hmmer-3.3.2/src/hmmconvert.c hmmer-3.3.2/src/p7_domain.c hmmer-3.3.2/src/errors.c hmmer-3.3.2/src/hmmfetch.c hmmer-3.3.2/src/p7_hmmfile.c hmmer-3.3.2/src/impl_vmx/p7_oprofile.c hmmer-3.3.2/src/impl_vmx/optacc.c hmmer-3.3.2/src/impl_vmx/vitscore.c hmmer-3.3.2/src/impl_vmx/io.c hmmer-3.3.2/src/impl_vmx/decoding.c hmmer-3.3.2/src/impl_vmx/msvfilter.c hmmer-3.3.2/src/impl_vmx/impl_vmx.h hmmer-3.3.2/src/impl_vmx/fwdback.c hmmer-3.3.2/src/impl_vmx/p7_omx.c 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hmmer-3.3.2/easel/esl_alphabet.h hmmer-3.3.2/easel/esl_random.h hmmer-3.3.2/easel/esl_msafile_stockholm.c hmmer-3.3.2/easel/esl_msafile_a2m.c hmmer-3.3.2/easel/esl_recorder.h hmmer-3.3.2/easel/esl_gev.tex hmmer-3.3.2/easel/esl_vmx.h hmmer-3.3.2/easel/esl_cluster.h hmmer-3.3.2/easel/miniapps/ hmmer-3.3.2/easel/esl_ssi.c hmmer-3.3.2/easel/esl_heap.h hmmer-3.3.2/easel/esl_hyperexp.tex hmmer-3.3.2/easel/esl_mpi.tex hmmer-3.3.2/easel/esl_wuss.tex hmmer-3.3.2/easel/esl_subcmd.c hmmer-3.3.2/easel/esl_dmatrix.tex hmmer-3.3.2/easel/esl_keyhash.h hmmer-3.3.2/easel/esl_arr3.h hmmer-3.3.2/easel/esl_sq.c hmmer-3.3.2/easel/esl_mem.h hmmer-3.3.2/easel/esl_stretchexp.h hmmer-3.3.2/easel/esl_matrixops.c hmmer-3.3.2/easel/documentation/ hmmer-3.3.2/easel/esl_getopts.c hmmer-3.3.2/easel/esl_dsqdata.tex hmmer-3.3.2/easel/install-sh hmmer-3.3.2/easel/configure.ac hmmer-3.3.2/easel/esl_regexp.h hmmer-3.3.2/easel/esl_getopts.md hmmer-3.3.2/easel/esl_dirichlet.h hmmer-3.3.2/easel/esl_sqio.h 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hmmer-3.3.2/easel/esl_weibull.h hmmer-3.3.2/easel/esl_paml.c hmmer-3.3.2/easel/esl_msafile_phylip.c hmmer-3.3.2/easel/esl_workqueue.h hmmer-3.3.2/easel/esl_msa.c hmmer-3.3.2/easel/esl_msafile2.h hmmer-3.3.2/easel/esl_tree.c hmmer-3.3.2/easel/esl_buffer.tex hmmer-3.3.2/easel/esl_sqio_ascii.h hmmer-3.3.2/easel/esl_hyperexp.h hmmer-3.3.2/easel/esl_arr2.c hmmer-3.3.2/easel/esl_weibull.tex hmmer-3.3.2/easel/esl_vectorops.c hmmer-3.3.2/easel/testsuite/ hmmer-3.3.2/easel/esl_ratematrix.c hmmer-3.3.2/easel/esl_msaweight.c hmmer-3.3.2/easel/esl_rootfinder.h hmmer-3.3.2/easel/esl_sqio_ncbi.c hmmer-3.3.2/easel/esl_normal.tex hmmer-3.3.2/easel/esl_mixgev.c hmmer-3.3.2/easel/esl_alphabet.tex hmmer-3.3.2/easel/esl_dsqdata.md hmmer-3.3.2/easel/esl_msafile_psiblast.c hmmer-3.3.2/easel/esl_bitfield.h hmmer-3.3.2/easel/esl_msafile_selex.h hmmer-3.3.2/easel/esl_msacluster.h hmmer-3.3.2/easel/esl_threads.h hmmer-3.3.2/easel/esl_minimizer.c hmmer-3.3.2/easel/esl_dsqdata.c hmmer-3.3.2/easel/esl_varint.c 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hmmer-3.3.2/documentation/man/hmmpgmd.man.in hmmer-3.3.2/documentation/man/hmmstat.man.in hmmer-3.3.2/documentation/man/hmmc2.man.in hmmer-3.3.2/documentation/man/hmmpgmd_shard.man.in hmmer-3.3.2/documentation/man/alimask.man.in hmmer-3.3.2/documentation/man/hmmpress.man.in hmmer-3.3.2/documentation/man/hmmfetch.man.in hmmer-3.3.2/documentation/man/nhmmer.man.in hmmer-3.3.2/documentation/man/hmmsearch.man.in hmmer-3.3.2/documentation/man/hmmer.man.in hmmer-3.3.2/documentation/man/hmmsim.man.in hmmer-3.3.2/documentation/man/hmmlogo.man.in hmmer-3.3.2/documentation/man/jackhmmer.man.in hmmer-3.3.2/documentation/man/hmmbuild.man.in hmmer-3.3.2/documentation/man/hmmemit.man.in hmmer-3.3.2/documentation/man/Makefile.in hmmer-3.3.2/documentation/man/hmmscan.man.in configure: Configuring HMMER3 for your system. checking build system type... i586-slackware-linux-gnu checking host system type... i586-slackware-linux-gnu checking whether to compile using MPI... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for gcc option to accept ISO C99... none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/ginstall -c checking for strip... strip checking for ranlib... ranlib checking for ar... /usr/bin/ar checking whether ln -s works... yes checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking whether gcc is Clang... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking whether gcc can compile our Altivec/VMX code... no checking whether gcc can compile our SSE code... yes, with -msse2 configure: Activating Intel/AMD SSE vector DP implementation checking whether _MM_SET_FLUSH_ZERO_MODE is supported... yes checking compiler support --start-group... yes checking for gzip... /usr/bin/gzip checking for python3... yes checking for library containing clock_gettime... none required checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking endian.h usability... yes checking endian.h presence... yes checking for endian.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/sysctl.h... no checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for off_t... yes checking whether byte ordering is bigendian... no checking for __attribute__((noreturn))... yes checking for __attribute__((format))... yes checking for mkstemp... yes checking for popen... yes checking for putenv... yes checking for strcasecmp... yes checking for strsep... yes checking for times... yes checking for getpid... yes checking for sysctl... no checking for sysconf... yes checking for getcwd... yes checking for chmod... yes checking for stat... yes checking for fstat... yes checking for erfc... no checking for library containing ntohs... none required checking for library containing ntohl... none required checking for library containing htons... none required checking for library containing htonl... none required checking for library containing socket... none required checking for library containing inet_pton... none required checking for _LARGEFILE_SOURCE value needed for large files... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating profmark/Makefile config.status: creating src/impl_sse/Makefile config.status: creating documentation/Makefile config.status: creating documentation/man/Makefile config.status: creating documentation/userguide/Makefile config.status: creating documentation/userguide/inclusions/Makefile config.status: creating libdivsufsort/Makefile config.status: creating easel/Makefile config.status: creating easel/miniapps/Makefile config.status: creating easel/testsuite/Makefile config.status: creating easel/documentation/Makefile config.status: creating documentation/userguide/titlepage.tex config.status: creating documentation/userguide/titlepage_daemon.tex config.status: creating documentation/userguide/copyright.tex config.status: creating documentation/man/alimask.man config.status: creating documentation/man/hmmalign.man config.status: creating documentation/man/hmmbuild.man config.status: creating documentation/man/hmmc2.man config.status: creating documentation/man/hmmconvert.man config.status: creating documentation/man/hmmemit.man config.status: creating documentation/man/hmmer.man config.status: creating documentation/man/hmmfetch.man config.status: creating documentation/man/hmmlogo.man config.status: creating documentation/man/hmmpgmd.man config.status: creating documentation/man/hmmpgmd_shard.man config.status: creating documentation/man/hmmpress.man config.status: creating documentation/man/hmmscan.man config.status: creating documentation/man/hmmsearch.man config.status: creating documentation/man/hmmsim.man config.status: creating documentation/man/hmmstat.man config.status: creating documentation/man/jackhmmer.man config.status: creating documentation/man/makehmmerdb.man config.status: creating documentation/man/nhmmer.man config.status: creating documentation/man/nhmmscan.man config.status: creating documentation/man/phmmer.man config.status: creating easel/miniapps/esl-afetch.man config.status: creating easel/miniapps/esl-alimanip.man config.status: creating easel/miniapps/esl-alimap.man config.status: creating easel/miniapps/esl-alimask.man config.status: creating easel/miniapps/esl-alimerge.man config.status: creating easel/miniapps/esl-alipid.man config.status: creating easel/miniapps/esl-alirev.man config.status: creating easel/miniapps/esl-alistat.man config.status: creating easel/miniapps/esl-compalign.man config.status: creating easel/miniapps/esl-compstruct.man config.status: creating easel/miniapps/esl-construct.man config.status: creating easel/miniapps/esl-histplot.man config.status: creating easel/miniapps/esl-mask.man config.status: creating easel/miniapps/esl-mixdchlet.man config.status: creating easel/miniapps/esl-reformat.man config.status: creating easel/miniapps/esl-selectn.man config.status: creating easel/miniapps/esl-seqrange.man config.status: creating easel/miniapps/esl-seqstat.man config.status: creating easel/miniapps/esl-sfetch.man config.status: creating easel/miniapps/esl-shuffle.man config.status: creating easel/miniapps/esl-ssdraw.man config.status: creating easel/miniapps/esl-translate.man config.status: creating easel/miniapps/esl-weight.man config.status: creating easel/decoy_config.h config.status: creating src/p7_config.h config.status: creating easel/esl_config.h config.status: creating libdivsufsort/divsufsort.h config.status: linking src/impl_sse to src/impl HMMER configuration: compiler: gcc -O2 -march=i586 -mtune=i686 -msse2 -pthread host: i586-slackware-linux-gnu linker: libraries: DP implementation: sse Now do 'make' to build HMMER, and optionally: 'make check' to run self tests, 'make install' to install programs and man pages, '(cd easel; make install)' to install Easel tools. SUBDIR easel CC easel.o CC esl_alloc.o CC esl_alphabet.o CC esl_arr2.o CC esl_arr3.o CC esl_bitfield.o CC esl_buffer.o CC esl_cluster.o CC esl_composition.o CC esl_cpu.o CC esl_dirichlet.o CC esl_distance.o CC esl_dmatrix.o CC esl_dsqdata.o CC esl_exponential.o CC esl_fileparser.o CC esl_gamma.o CC esl_gencode.o CC esl_getopts.o CC esl_gev.o CC esl_graph.o CC esl_gumbel.o CC esl_heap.o CC esl_histogram.o CC esl_hmm.o CC esl_huffman.o CC esl_hyperexp.o CC esl_json.o CC esl_keyhash.o CC esl_matrixops.o CC esl_mem.o CC esl_minimizer.o CC esl_mixdchlet.o CC esl_mixgev.o CC esl_mpi.o CC esl_msa.o CC esl_msacluster.o CC esl_msafile.o CC esl_msafile2.o CC esl_msafile_a2m.o CC esl_msafile_afa.o CC esl_msafile_clustal.o CC esl_msafile_phylip.o CC esl_msafile_psiblast.o CC esl_msafile_selex.o CC esl_msafile_stockholm.o CC esl_msashuffle.o CC esl_msaweight.o CC esl_normal.o CC esl_paml.o CC esl_quicksort.o CC esl_random.o CC esl_rand64.o CC esl_randomseq.o CC esl_ratematrix.o CC esl_recorder.o CC esl_red_black.o CC esl_regexp.o CC esl_rootfinder.o CC esl_scorematrix.o CC esl_sq.o CC esl_sqio.o CC esl_sqio_ascii.o CC esl_sqio_ncbi.o CC esl_ssi.o CC esl_stack.o CC esl_stats.o CC esl_stopwatch.o CC esl_stretchexp.o CC esl_subcmd.o CC esl_threads.o CC esl_tree.o CC esl_varint.o CC esl_vectorops.o CC esl_weibull.o CC esl_workqueue.o CC esl_wuss.o CC esl_sse.o CC esl_avx.o CC esl_avx512.o CC esl_neon.o CC esl_vmx.o AR libeasel.a SUBDIR miniapps GEN esl-afetch GEN esl-alimanip GEN esl-alimap GEN esl-alimask GEN esl-alimerge GEN esl-alipid GEN esl-alirev GEN esl-alistat GEN esl-compalign GEN esl-compstruct GEN esl-construct GEN esl-histplot GEN esl-mask GEN esl-mixdchlet GEN esl-reformat GEN esl-selectn GEN esl-seqrange GEN esl-seqstat GEN esl-sfetch GEN esl-shuffle GEN esl-ssdraw GEN esl-translate GEN esl-weight CC cmd_alistat.o CC cmd_downsample.o CC cmd_filter.o CC cmd_index.o GEN easel SUBDIR libdivsufsort CC divsufsort.o AR libdivsufsort.a SUBDIR src CC alimask.o CC build.o CC cachedb.o CC cachedb_shard.o CC emit.o CC errors.o CC evalues.o CC eweight.o CC generic_decoding.o CC generic_fwdback.o CC generic_fwdback_chk.o CC generic_fwdback_banded.o CC generic_null2.o CC generic_msv.o CC generic_optacc.o CC generic_stotrace.o CC generic_viterbi.o CC generic_vtrace.o CC h2_io.o CC heatmap.o CC hmmlogo.o CC hmmdmstr.o CC hmmdmstr_shard.o CC hmmd_search_status.o CC hmmdwrkr.o CC hmmdwrkr_shard.o CC hmmdutils.o CC hmmer.o CC logsum.o CC modelconfig.o CC modelstats.o CC mpisupport.o CC seqmodel.o CC tracealign.o CC p7_alidisplay.o CC p7_bg.o CC p7_builder.o CC p7_domain.o CC p7_domaindef.o CC p7_gbands.o CC p7_gmx.o CC p7_gmxb.o CC p7_gmxchk.o CC p7_hit.o CC p7_hmm.o CC p7_hmmcache.o CC p7_hmmd_search_stats.o CC p7_hmmfile.o CC p7_hmmwindow.o CC p7_pipeline.o CC p7_prior.o CC p7_profile.o CC p7_spensemble.o CC p7_tophits.o CC p7_trace.o CC p7_scoredata.o CC hmmpgmd2msa.o CC fm_alphabet.o CC fm_general.o CC fm_sse.o CC fm_ssv.o AR libhmmer-src.stamp SUBDIR impl_sse CC decoding.o CC fwdback.o CC io.o CC ssvfilter.o CC msvfilter.o CC null2.o CC optacc.o CC stotrace.o CC vitfilter.o CC p7_omx.o CC p7_oprofile.o CC mpi.o AR libhmmer-impl.stamp GEN alimask CC hmmalign.o GEN hmmalign CC hmmbuild.o GEN hmmbuild CC hmmconvert.o GEN hmmconvert CC hmmemit.o GEN hmmemit CC hmmfetch.o GEN hmmfetch GEN hmmlogo CC hmmpgmd.o GEN hmmpgmd CC hmmpgmd_shard.o GEN hmmpgmd_shard CC hmmpress.o GEN hmmpress CC hmmscan.o GEN hmmscan CC hmmsearch.o GEN hmmsearch CC hmmsim.o GEN hmmsim CC hmmstat.o GEN hmmstat CC jackhmmer.o GEN jackhmmer CC phmmer.o GEN phmmer CC nhmmer.o GEN nhmmer CC nhmmscan.o GEN nhmmscan CC makehmmerdb.o GEN makehmmerdb CC hmmc2.o GEN hmmc2 CC hmmerfm-exactmatch.o GEN hmmerfm-exactmatch SUBDIR profmark CC create-profmark.o GEN create-profmark CC rocplot.o GEN rocplot SUBDIR easel GEN easel_utest GEN esl_alloc_utest GEN esl_alphabet_utest GEN esl_bitfield_utest GEN esl_buffer_utest GEN esl_cluster_utest GEN esl_cpu_utest GEN esl_dirichlet_utest GEN esl_distance_utest GEN esl_dmatrix_utest GEN esl_dsqdata_utest GEN esl_exponential_utest GEN esl_fileparser_utest GEN esl_gamma_utest GEN esl_gencode_utest GEN esl_getopts_utest GEN esl_graph_utest GEN esl_gumbel_utest GEN esl_heap_utest GEN esl_histogram_utest GEN esl_hmm_utest GEN esl_huffman_utest GEN esl_hyperexp_utest GEN esl_json_utest GEN esl_keyhash_utest GEN esl_matrixops_utest GEN esl_mem_utest GEN esl_minimizer_utest GEN esl_mixdchlet_utest GEN esl_msa_utest GEN esl_msacluster_utest GEN esl_msafile_utest GEN esl_msafile2_utest GEN esl_msafile_a2m_utest GEN esl_msafile_afa_utest GEN esl_msafile_clustal_utest GEN esl_msafile_phylip_utest GEN esl_msafile_psiblast_utest GEN esl_msafile_selex_utest GEN esl_msafile_stockholm_utest GEN esl_msaweight_utest GEN esl_normal_utest GEN esl_quicksort_utest GEN esl_random_utest GEN esl_rand64_utest GEN esl_randomseq_utest GEN esl_ratematrix_utest GEN esl_red_black_utest GEN esl_recorder_utest GEN esl_regexp_utest GEN esl_rootfinder_utest GEN esl_scorematrix_utest GEN esl_sq_utest GEN esl_sqio_utest GEN esl_ssi_utest GEN esl_stack_utest GEN esl_stats_utest GEN esl_stretchexp_utest GEN esl_tree_utest GEN esl_varint_utest GEN esl_vectorops_utest GEN esl_weibull_utest GEN esl_wuss_utest GEN esl_sse_utest GEN esl_avx_utest GEN esl_avx512_utest GEN esl_neon_utest GEN esl_vmx_utest SUBDIR miniapps SUBDIR libdivsufsort SUBDIR src SUBDIR impl_sse GEN build_utest GEN generic_fwdback_utest GEN generic_fwdback_chk_utest GEN generic_msv_utest GEN generic_stotrace_utest GEN generic_viterbi_utest GEN hmmer_utest GEN logsum_utest GEN modelconfig_utest GEN seqmodel_utest GEN p7_alidisplay_utest GEN p7_bg_utest GEN p7_domain_utest GEN p7_gmx_utest GEN p7_gmxchk_utest GEN p7_hit_utest GEN p7_hmmd_search_stats_utest GEN p7_hmm_utest GEN p7_hmmfile_utest GEN p7_profile_utest GEN p7_tophits_utest GEN p7_trace_utest GEN p7_scoredata_utest GEN hmmpgmd2msa_utest GEN hmmd_search_status_utest CC itest_brute.o GEN itest_brute SUBDIR impl_sse GEN decoding_utest GEN fwdback_utest GEN io_utest GEN msvfilter_utest GEN null2_utest GEN optacc_utest GEN stotrace_utest GEN vitfilter_utest SUBDIR easel SUBDIR miniapps SUBDIR testsuite Running Easel test suite... exercise 1 [ easel-utest] ... ok. exercise 2 [ alloc-utest] ... ok. exercise 3 [ alphabet-utest] ... ok. exercise 4 [ avx-utest] ... ok. exercise 5 [ avx512-utest] ... ok. exercise 6 [ bitfield-utest] ... ok. exercise 7 [ buffer-utest] ... ok. exercise 8 [ cluster-utest] ... ok. exercise 9 [ cpu-utest] ... ok. exercise 10 [ dirichlet-utest] ... ok. exercise 11 [ distance-utest] ... ok. exercise 12 [ dmatrix-utest] ... ok. exercise 13 [ dsqdata-utest] ... ok. exercise 14 [ exponential-utest] ... ok. exercise 15 [ fileparser-utest] ... ok. exercise 16 [ gamma-utest] ... ok. exercise 17 [ gencode-utest] ... ok. exercise 18 [ getopts-utest] ... ok. exercise 19 [ graph-utest] ... ok. exercise 20 [ gumbel-utest] ... ok. exercise 21 [ heap-utest] ... ok. exercise 22 [ histogram-utest] ... ok. exercise 23 [ huffman-utest] ... ok. exercise 24 [ hyperexp-utest] ... ok. exercise 25 [ json-utest] ... ok. exercise 26 [ keyhash-utest] ... ok. exercise 27 [ matrixops-utest] ... ok. exercise 28 [ mem-utest] ... ok. exercise 29 [ minimizer-utest] ... ok. exercise 30 [ mixdchlet-utest] ... ok. exercise 31 [ msa-utest] ... ok. exercise 32 [ msacluster-utest] ... ok. exercise 33 [ msafile] ... ok. exercise 34 [ msafile2] ... ok. exercise 35 [ msafile-a2m] ... ok. exercise 36 [ msafile-afa] ... ok. exercise 37 [ msafile-clustal] ... ok. exercise 38 [ msafile-phylip] ... ok. exercise 39 [ msafile-psiblast] ... ok. exercise 40 [ msafile-selex] ... ok. exercise 41 [ msafile-stockholm] ... ok. exercise 42 [ msaweight-utest] ... ok. exercise 43 [ neon-utest] ... ok. exercise 44 [ normal-utest] ... ok. exercise 45 [ quicksort-utest] ... ok. exercise 46 [ random-utest] ... ok. exercise 47 [ rand64-utest] ... ok. exercise 48 [ randomseq-utest] ... ok. exercise 49 [ ratematrix-utest] ... ok. exercise 50 [ recorder-utest] ... ok. exercise 51 [ red_black-utest] ... ok. exercise 52 [ regexp-utest] ... ok. exercise 53 [ rootfinder-utest] ... ok. exercise 54 [ scorematrix-utest] ... ok. exercise 55 [ sq-utest] ... ok. exercise 56 [ sqio-utest] ... ok. exercise 57 [ sse-utest] ... ok. exercise 58 [ ssi-utest] ... ok. exercise 59 [ stack-utest] ... ok. exercise 60 [ stats-utest] ... ok. exercise 61 [ stretchexp-utest] ... ok. exercise 62 [ tree-utest] ... ok. exercise 63 [ varint-utest] ... ok. exercise 64 [ vectorops-utest] ... ok. exercise 65 [ vmx-utest] ... ok. exercise 66 [ weibull-utest] ... ok. exercise 67 [ wuss-utest] ... ok. exercise 68 [ e2] ... ok. exercise 69 [ degen-residues] ... ok. exercise 70 [ ncbi-indices] ... ok. exercise 71 [ blank-gf] ... ok. exercise 72 [ esl-translate] ... ok. exercise 73 [ esl-afetch] ... ok. exercise 74 [ esl-alimanip] ... ok. exercise 75 [ esl-alimap] ... ok. exercise 76 [ esl-alimask] ... ok. exercise 77 [ esl-alimerge] ... ok. exercise 78 [ esl-alistat] ... ok. exercise 79 [ esl-compalign] ... ok. exercise 80 [ esl-construct] ... ok. exercise 81 [ esl-mask] ... ok. exercise 82 [ esl-seqrange] ... ok. exercise 83 [ esl-shuffle] ... ok. exercise 84 [ esl-ssdraw] ... ok. All 84 exercises at level <= 2 passed. System information: Fri Jun 3 10:12:41 -00 2022 Linux forum-2 4.4.276 #1 SMP Tue Jul 20 23:23:58 CDT 2021 i686 Intel(R) Core(TM) i7-7700K CPU @ 4.20GHz GenuineIntel GNU/Linux SUBDIR testsuite Running HMMER test suite... exercise 1 [ hmmer] ... ok. exercise 2 [ build] ... ok. exercise 3 [ generic_fwdback] ... ok. exercise 4 [ generic_msv] ... ok. exercise 5 [ generic_stotrace] ... ok. exercise 6 [ generic_viterbi] ... ok. exercise 7 [ hmmd_search_status] ... ok. exercise 8 [ logsum] ... ok. exercise 9 [ modelconfig] ... ok. exercise 10 [ seqmodel] ... ok. exercise 11 [ p7_alidisplay] ... ok. exercise 12 [ p7_bg] ... ok. exercise 13 [ p7_domain] ... ok. exercise 14 [ p7_gmx] ... ok. exercise 15 [ p7_hit] ... ok. exercise 16 [ p7_hmm] ... ok. exercise 17 [ p7_hmmfile] ... ok. exercise 18 [ p7_hmmd_search_stats] ... ok. exercise 19 [ p7_profile] ... ok. exercise 20 [ p7_tophits] ... ok. exercise 21 [ p7_trace] ... ok. exercise 22 [ p7_scoredata] ... ok. exercise 23 [ decoding] ... ok. exercise 24 [ fwdback] ... ok. exercise 25 [ io] ... ok. exercise 26 [ msvfilter] ... ok. exercise 27 [ null2] ... ok. exercise 28 [ optacc] ... ok. exercise 29 [ stotrace] ... ok. exercise 30 [ vitfilter] ... ok. exercise 31 [ hmmpgmd2msa] ... ok. exercise 32 [ hmmalign] ... ok. exercise 33 [ hmmalign/-h] ... ok. exercise 34 [ hmmalign/-o] ... ok. exercise 35 [ hmmalign/--mapali] ... ok. exercise 36 [ hmmalign/--trim] ... ok. exercise 37 [ hmmalign/--amino] ... ok. exercise 38 [ hmmalign/--informat] ... ok. exercise 39 [ hmmalign/--outformat] ... ok. exercise 40 [ hmmbuild] ... ok. exercise 41 [ build/-h] ... ok. exercise 42 [ build/-n] ... ok. exercise 43 [ build/-o] ... ok. exercise 44 [ build/-O] ... ok. exercise 45 [ build/--amino] ... ok. exercise 46 [ build/--dna] ... ok. exercise 47 [ build/--rna] ... ok. exercise 48 [ build/--fast] ... ok. exercise 49 [ build/--hand] ... ok. exercise 50 [ build/--symfrac] ... ok. exercise 51 [ build/--fragthresh] ... ok. exercise 52 [ build/--wpb] ... ok. exercise 53 [ build/--wgsc] ... ok. exercise 54 [ build/--wblosum] ... ok. exercise 55 [ build/--wnone] ... ok. exercise 56 [ build/--wid] ... ok. exercise 57 [ build/--eent] ... ok. exercise 58 [ build/--eclust] ... ok. exercise 59 [ build/--enone] ... ok. exercise 60 [ build/--eset] ... ok. exercise 61 [ build/--ere] ... ok. exercise 62 [ build/--esigma] ... ok. exercise 63 [ build/--eid] ... ok. exercise 64 [ build/--pnone] ... ok. exercise 65 [ build/--plaplace] ... ok. exercise 66 [ build/--EmL] ... ok. exercise 67 [ build/--EmN] ... ok. exercise 68 [ build/--EvL] ... ok. exercise 69 [ build/--EvN] ... ok. exercise 70 [ build/--EfL] ... ok. exercise 71 [ build/--EfN] ... ok. exercise 72 [ build/--Eft] ... ok. exercise 73 [ build/--informat] ... ok. exercise 74 [ build/--seed] ... ok. exercise 75 [ search] ... ok. exercise 76 [ search/-h] ... ok. exercise 77 [ search/-o] ... ok. exercise 78 [ search/-A] ... ok. exercise 79 [ search/--tblout] ... ok. exercise 80 [ search/--domtblout] ... ok. exercise 81 [ search/--pfamtblout] ... ok. exercise 82 [ search/--acc] ... ok. exercise 83 [ search/--noali] ... ok. exercise 84 [ search/--notextw] ... ok. exercise 85 [ search/--textw] ... ok. exercise 86 [ search/-E] ... ok. exercise 87 [ search/-T] ... ok. exercise 88 [ search/--domE] ... ok. exercise 89 [ search/--domT] ... ok. exercise 90 [ search/--incE] ... ok. exercise 91 [ search/--incT] ... ok. exercise 92 [ search/--incdomE] ... ok. exercise 93 [ search/--incdomT] ... ok. exercise 94 [ search/--cut_ga] ... ok. exercise 95 [ search/--cut_nc] ... ok. exercise 96 [ search/--cut_tc] ... ok. exercise 97 [ search/--max] ... ok. exercise 98 [ search/--F1] ... ok. exercise 99 [ search/--F2] ... ok. exercise 100 [ search/--F3] ... ok. exercise 101 [ search/--nobias] ... ok. exercise 102 [ search/--nonull2] ... ok. exercise 103 [ search/-Z] ... ok. exercise 104 [ search/--domZ] ... ok. exercise 105 [ search/--seed] ... ok. exercise 106 [ search/--tformat] ... ok. exercise 107 [ hmmscan] ... ok. exercise 108 [ scan/-h] ... ok. exercise 109 [ scan/-o] ... ok. exercise 110 [ scan/--tblout] ... ok. exercise 111 [ scan/--domtblout] ... ok. exercise 112 [ scan/--pfamtblout] ... ok. exercise 113 [ scan/--acc] ... ok. exercise 114 [ scan/--noali] ... ok. exercise 115 [ scan/--notextw] ... ok. exercise 116 [ scan/--textw] ... ok. exercise 117 [ scan/-E] ... ok. exercise 118 [ scan/-T] ... ok. exercise 119 [ scan/--domE] ... ok. exercise 120 [ scan/--domT] ... ok. exercise 121 [ scan/--incE] ... ok. exercise 122 [ scan/--incT] ... ok. exercise 123 [ scan/--incdomE] ... ok. exercise 124 [ scan/--incdomT] ... ok. exercise 125 [ scan/--incdomT] ... ok. exercise 126 [ scan/--cut_ga] ... ok. exercise 127 [ scan/--cut_nc] ... ok. exercise 128 [ scan/--cut_tc] ... ok. exercise 129 [ scan/--max] ... ok. exercise 130 [ scan/--F1] ... ok. exercise 131 [ scan/--F2] ... ok. exercise 132 [ scan/--F3] ... ok. exercise 133 [ scan/--nobias] ... ok. exercise 134 [ scan/--nonull2] ... ok. exercise 135 [ scan/-Z] ... ok. exercise 136 [ scan/--domZ] ... ok. exercise 137 [ scan/--seed] ... ok. exercise 138 [ scan/--qformat] ... ok. exercise 139 [ scan/--cpu] ... ok. exercise 140 [ jackhmmer] ... ok. exercise 141 [ j/-h] ... ok. exercise 142 [ j/-N] ... ok. exercise 143 [ j/-o] ... ok. exercise 144 [ j/-A] ... ok. exercise 145 [ j/--tblout] ... ok. exercise 146 [ j/--domtblout] ... ok. exercise 147 [ j/--chkhmm] ... ok. exercise 148 [ j/--chkali] ... ok. exercise 149 [ j/--acc] ... ok. exercise 150 [ j/--noali] ... ok. exercise 151 [ j/--notextw] ... ok. exercise 152 [ j/--textw] ... ok. exercise 153 [ j/--popen] ... ok. exercise 154 [ j/--pextend] ... ok. exercise 155 [ j/--mxfile] ... ok. exercise 156 [ j/-E] ... ok. exercise 157 [ j/-T] ... ok. exercise 158 [ j/--domE] ... ok. exercise 159 [ j/--domT] ... ok. exercise 160 [ j/--incE] ... ok. exercise 161 [ j/--incT] ... ok. exercise 162 [ j/--incdomE] ... ok. exercise 163 [ j/--incdomT] ... ok. exercise 164 [ j/--max] ... ok. exercise 165 [ j/--F1] ... ok. exercise 166 [ j/--F2] ... ok. exercise 167 [ j/--F3] ... ok. exercise 168 [ j/--nobias] ... ok. exercise 169 [ j/--EmL] ... ok. exercise 170 [ j/--EmN] ... ok. exercise 171 [ j/--EvL] ... ok. exercise 172 [ j/--EvN] ... ok. exercise 173 [ j/--EfL] ... ok. exercise 174 [ j/--EfN] ... ok. exercise 175 [ j/--Eft] ... ok. exercise 176 [ j/--nonull2] ... ok. exercise 177 [ j/-Z] ... ok. exercise 178 [ j/--domZ] ... ok. exercise 179 [ j/--seed] ... ok. exercise 180 [ j/--qformat] ... ok. exercise 181 [ j/--tformat] ... ok. exercise 182 [ phmmer] ... ok. exercise 183 [ phmmer/-h] ... ok. exercise 184 [ phmmer/-o] ... ok. exercise 185 [ phmmer/-A] ... ok. exercise 186 [ phmmer/--tblout] ... ok. exercise 187 [ phmmer/--domtblout] ... ok. exercise 188 [ phmmer/--pfamtblout] ... ok. exercise 189 [ phmmer/--acc] ... ok. exercise 190 [ phmmer/--noali] ... ok. exercise 191 [ phmmer/--notextw] ... ok. exercise 192 [ phmmer/--textw] ... ok. exercise 193 [ phmmer/--popen] ... ok. exercise 194 [ phmmer/--pextend] ... ok. exercise 195 [ phmmer/--mxfile] ... ok. exercise 196 [ phmmer/-E] ... ok. exercise 197 [ phmmer/-T] ... ok. exercise 198 [ phmmer/--domE] ... ok. exercise 199 [ phmmer/--domT] ... ok. exercise 200 [ phmmer/--incE] ... ok. exercise 201 [ phmmer/--incT] ... ok. exercise 202 [ phmmer/--incdomE] ... ok. exercise 203 [ phmmer/--incdomT] ... ok. exercise 204 [ phmmer/--max] ... ok. exercise 205 [ phmmer/--F1] ... ok. exercise 206 [ phmmer/--F2] ... ok. exercise 207 [ phmmer/--F3] ... ok. exercise 208 [ phmmer/--nobias] ... ok. exercise 209 [ phmmer/--EmL] ... ok. exercise 210 [ phmmer/--EmN] ... ok. exercise 211 [ phmmer/--EvL] ... ok. exercise 212 [ phmmer/--EvN] ... ok. exercise 213 [ phmmer/--EfL] ... ok. exercise 214 [ phmmer/--EfN] ... ok. exercise 215 [ phmmer/--Eft] ... ok. exercise 216 [ phmmer/--nonull2] ... ok. exercise 217 [ phmmer/-Z] ... ok. exercise 218 [ phmmer/--domZ] ... ok. exercise 219 [ phmmer/--seed] ... ok. exercise 220 [ phmmer/--qformat] ... ok. exercise 221 [ phmmer/--tformat] ... ok. exercise 222 [ nhmmer] ... ok. exercise 223 [ nhmmer/-h] ... ok. exercise 224 [ nhmmer/-o] ... ok. exercise 225 [ nhmmer/-A] ... ok. exercise 226 [ nhmmer/--tblout] ... ok. exercise 227 [ nhmmer/--dfamtblout] ... ok. exercise 228 [ nhmmer/--acc] ... ok. exercise 229 [ nhmmer/--noali] ... ok. exercise 230 [ nhmmer/--notextw] ... ok. exercise 231 [ nhmmer/--textw] ... ok. exercise 232 [ nhmmer/-E] ... ok. exercise 233 [ nhmmer/-T] ... ok. exercise 234 [ nhmmer/--incE] ... ok. exercise 235 [ nhmmer/--incT] ... ok. exercise 236 [ nhmmer/--max] ... ok. exercise 237 [ nhmmer/--F1] ... ok. exercise 238 [ nhmmer/--F2] ... ok. exercise 239 [ nhmmer/--F3] ... ok. exercise 240 [ nhmmer/--nobias] ... ok. exercise 241 [ nhmmer/--nonull2] ... ok. exercise 242 [ nhmmer/-Z] ... ok. exercise 243 [ nhmmer/--seed] ... ok. exercise 244 [ nhmmscan] ... ok. exercise 245 [ nhmmscan/-h] ... ok. exercise 246 [ nhmmscan/-o] ... ok. exercise 247 [ nhmmscan/--tblout] ... ok. exercise 248 [nhmmscan/--dfamtblout] ... ok. exercise 249 [ nhmmscan/--acc] ... ok. exercise 250 [ nhmmscan/--noali] ... ok. exercise 251 [ nhmmscan/--notextw] ... ok. exercise 252 [ nhmmscan/--textw] ... ok. exercise 253 [ nhmmscan/-E] ... ok. exercise 254 [ nhmmscan/-T] ... ok. exercise 255 [ nhmmscan/--incE] ... ok. exercise 256 [ nhmmscan/--incT] ... ok. exercise 257 [ nhmmscan/--max] ... ok. exercise 258 [ nhmmscan/--F1] ... ok. exercise 259 [ nhmmscan/--F2] ... ok. exercise 260 [ nhmmscan/--F3] ... ok. exercise 261 [ nhmmscan/--nobias] ... ok. exercise 262 [ nhmmscan/--nonull2] ... ok. exercise 263 [ nhmmscan/-Z] ... ok. exercise 264 [ nhmmscan/--seed] ... ok. exercise 265 [ hmmemit] ... ok. exercise 266 [ hmmemit/-h] ... ok. exercise 267 [ hmmemit/-c] ... ok. exercise 268 [ hmmemit/-o] ... ok. exercise 269 [ hmmemit/-p] ... ok. exercise 270 [ hmmemit/-N] ... ok. exercise 271 [ hmmemit/-L] ... ok. exercise 272 [ hmmemit/--local] ... ok. exercise 273 [ hmmemit/--unilocal] ... ok. exercise 274 [ hmmemit/--glocal] ... ok. exercise 275 [ hmmemit/--uniglocal] ... ok. exercise 276 [ hmmfetch] ... ok. exercise 277 [ hmmstat] ... ok. exercise 278 [ hmmlogo] ... ok. exercise 279 [ hmmconvert] ... ok. exercise 280 [ hmmsim] ... ok. exercise 281 [ hmmbuild_variation] ... ok. exercise 282 [ hmmscan_variation] ... ok. exercise 283 [ hmmsearch_variation] ... ok. exercise 284 [ phmmer_variation] ... ok. exercise 285 [ mapali] ... ok. exercise 286 [ fragments] ... ok. exercise 287 [ nonresidues] ... ok. exercise 288 [ opt-annotation] ... ok. exercise 289 [ dup-names] ... ok. exercise 290 [ mapali-again] ... ok. exercise 291 [ delete-corruption] ... ok. exercise 292 [ msa-integrity] ... ok. exercise 293 [ hmmemit-consensus] ... ok. exercise 294 [ hmmconvert] ... ok. exercise 295 [ stdin_pipes] ... ok. exercise 296 [ nhmmer_generic] ... ok. exercise 297 [ hmmpgmd_ga] ... ok. exercise 298 [ rewind] ... ok. exercise 299 [ hmmpgmd_shard_ga] ... ok. exercise 300 [ bad-fasta] ... ok. exercise 301 [ brute-itest] ... ok. exercise 302 [ hmmpress-itest] ... ok. exercise 303 [ h39] ... ok. exercise 304 [ h45] ... ok. exercise 305 [ h50] ... ok. exercise 306 [ h82] ... ok. exercise 307 [ iss159] ... ok. All 307 exercises at level <= 2 passed. System information: Fri Jun 3 10:13:07 -00 2022 Linux forum-2 4.4.276 #1 SMP Tue Jul 20 23:23:58 CDT 2021 i686 Intel(R) Core(TM) i7-7700K CPU @ 4.20GHz GenuineIntel GNU/Linux SUBDIR easel SUBDIR miniapps SUBDIR libdivsufsort SUBDIR src SUBDIR impl_sse SUBDIR profmark /usr/bin/ginstall -c -d /usr/src/slapt-src/academic/HMMER/package-HMMER/usr/bin /usr/bin/ginstall -c -d /usr/src/slapt-src/academic/HMMER/package-HMMER/usr/man/man1 make -C src install make[1]: Entering directory '/usr/src/slapt-src/academic/HMMER/hmmer-3.3.2/src' for file in alimask hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpgmd_shard hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer phmmer nhmmer nhmmscan makehmmerdb; do \ /usr/bin/ginstall -c -m 0755 $file /usr/src/slapt-src/academic/HMMER/package-HMMER/usr/bin/ ;\ done make[1]: Leaving directory '/usr/src/slapt-src/academic/HMMER/hmmer-3.3.2/src' make -C documentation install make[1]: Entering directory '/usr/src/slapt-src/academic/HMMER/hmmer-3.3.2/documentation' make -C man install make[2]: Entering directory '/usr/src/slapt-src/academic/HMMER/hmmer-3.3.2/documentation/man' for file in hmmer hmmalign hmmbuild hmmc2 hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpgmd_shard hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer makehmmerdb phmmer nhmmer nhmmscan alimask; do \ /usr/bin/ginstall -c -m 0664 $file.man /usr/src/slapt-src/academic/HMMER/package-HMMER/usr/man/man1/${file}.1 ;\ done make[2]: Leaving directory '/usr/src/slapt-src/academic/HMMER/hmmer-3.3.2/documentation/man' make[1]: Leaving directory '/usr/src/slapt-src/academic/HMMER/hmmer-3.3.2/documentation' Slackware package maker, version 3.14159265. Searching for symbolic links: No symbolic links were found, so we won't make an installation script. You can make your own later in ./install/doinst.sh and rebuild the package if you like. This next step is optional - you can set the directories in your package to some sane permissions. If any of the directories in your package have special permissions, then DO NOT reset them here! Would you like to reset all directory permissions to 755 (drwxr-xr-x) and directory ownerships to root.root ([y]es, [n]o)? n Creating Slackware package: /usr/src/slapt-src/academic/HMMER/HMMER-3.3.2-i586-1salix15.0.txz ./ install/ install/slack-desc usr/ usr/bin/ usr/bin/alimask usr/bin/hmmalign usr/bin/hmmbuild usr/bin/hmmconvert usr/bin/hmmemit usr/bin/hmmfetch usr/bin/hmmlogo usr/bin/hmmpgmd usr/bin/hmmpgmd_shard usr/bin/hmmpress usr/bin/hmmscan usr/bin/hmmsearch usr/bin/hmmsim usr/bin/hmmstat usr/bin/jackhmmer usr/bin/makehmmerdb usr/bin/nhmmer usr/bin/nhmmscan usr/bin/phmmer usr/doc/ usr/doc/HMMER-3.3.2/ usr/doc/HMMER-3.3.2/HMMER.SlackBuild usr/doc/HMMER-3.3.2/INSTALL usr/doc/HMMER-3.3.2/LICENSE usr/doc/HMMER-3.3.2/README.md usr/doc/HMMER-3.3.2/RELEASE-3.3.2.md usr/doc/HMMER-3.3.2/Userguide.pdf usr/man/ usr/man/man1/ usr/man/man1/alimask.1.gz usr/man/man1/hmmalign.1.gz usr/man/man1/hmmbuild.1.gz usr/man/man1/hmmc2.1.gz usr/man/man1/hmmconvert.1.gz usr/man/man1/hmmemit.1.gz usr/man/man1/hmmer.1.gz usr/man/man1/hmmfetch.1.gz usr/man/man1/hmmlogo.1.gz usr/man/man1/hmmpgmd.1.gz usr/man/man1/hmmpgmd_shard.1.gz usr/man/man1/hmmpress.1.gz usr/man/man1/hmmscan.1.gz usr/man/man1/hmmsearch.1.gz usr/man/man1/hmmsim.1.gz usr/man/man1/hmmstat.1.gz usr/man/man1/jackhmmer.1.gz usr/man/man1/makehmmerdb.1.gz usr/man/man1/nhmmer.1.gz usr/man/man1/nhmmscan.1.gz usr/man/man1/phmmer.1.gz usr/share/ usr/share/HMMER/ usr/share/HMMER/testsuite/ usr/share/HMMER/testsuite/20aa-alitest.afa usr/share/HMMER/testsuite/20aa-alitest.fa usr/share/HMMER/testsuite/20aa-alitest.phr usr/share/HMMER/testsuite/20aa-alitest.pin usr/share/HMMER/testsuite/20aa-alitest.pog usr/share/HMMER/testsuite/20aa-alitest.psd usr/share/HMMER/testsuite/20aa-alitest.psi usr/share/HMMER/testsuite/20aa-alitest.psq usr/share/HMMER/testsuite/20aa-alitest.sto usr/share/HMMER/testsuite/20aa.hmm usr/share/HMMER/testsuite/20aa.sto usr/share/HMMER/testsuite/2OG-FeII_Oxy_3-nt.hmm usr/share/HMMER/testsuite/2OG-FeII_Oxy_3.hmm usr/share/HMMER/testsuite/3box-alitest.fa usr/share/HMMER/testsuite/3box-alitest.nhr usr/share/HMMER/testsuite/3box-alitest.nin usr/share/HMMER/testsuite/3box-alitest.nog usr/share/HMMER/testsuite/3box-alitest.nsd usr/share/HMMER/testsuite/3box-alitest.nsi usr/share/HMMER/testsuite/3box-alitest.nsq usr/share/HMMER/testsuite/3box.hmm usr/share/HMMER/testsuite/3box.sto usr/share/HMMER/testsuite/Caudal_act.hmm usr/share/HMMER/testsuite/Caudal_act.sto usr/share/HMMER/testsuite/LuxC.hmm usr/share/HMMER/testsuite/LuxC.sto usr/share/HMMER/testsuite/M1.hmm usr/share/HMMER/testsuite/M1.sto usr/share/HMMER/testsuite/Makefile usr/share/HMMER/testsuite/Makefile.in usr/share/HMMER/testsuite/PAX8_HUMAN usr/share/HMMER/testsuite/PSE.hmm usr/share/HMMER/testsuite/PSE.sto usr/share/HMMER/testsuite/Patched.hmm usr/share/HMMER/testsuite/Patched.sto usr/share/HMMER/testsuite/RRM_1.hmm usr/share/HMMER/testsuite/RRM_1.sto usr/share/HMMER/testsuite/SMC_N.hmm usr/share/HMMER/testsuite/SMC_N.sto usr/share/HMMER/testsuite/XYPPX.hmm usr/share/HMMER/testsuite/XYPPX.sto usr/share/HMMER/testsuite/ecori.fa usr/share/HMMER/testsuite/ecori.hmm usr/share/HMMER/testsuite/ecori.sto usr/share/HMMER/testsuite/h3.pm usr/share/HMMER/testsuite/i1-build-variation.sh usr/share/HMMER/testsuite/i10-duplicate-names.pl usr/share/HMMER/testsuite/i11-hmmalign-mapali.pl usr/share/HMMER/testsuite/i12-delete-corruption.pl usr/share/HMMER/testsuite/i13-msa-integrity.pl usr/share/HMMER/testsuite/i14-hmmemit-consensus.pl usr/share/HMMER/testsuite/i15-hmmconvert.pl usr/share/HMMER/testsuite/i16-build-allins.pl usr/share/HMMER/testsuite/i17-stdin.pl usr/share/HMMER/testsuite/i18-nhmmer-generic.pl usr/share/HMMER/testsuite/i19-hmmpgmd-ga.pl usr/share/HMMER/testsuite/i2-search-variation.sh usr/share/HMMER/testsuite/i20-fmindex-core.pl usr/share/HMMER/testsuite/i21-rewind.pl usr/share/HMMER/testsuite/i22-hmmpgmd-shard-ga.pl usr/share/HMMER/testsuite/i23-bad-fasta.sh usr/share/HMMER/testsuite/i3-seqsearch-variation.sh usr/share/HMMER/testsuite/i4-zerolength-seqs.sh usr/share/HMMER/testsuite/i5-hmmbuild-naming.pl usr/share/HMMER/testsuite/i6-hmmalign-mapali.pl usr/share/HMMER/testsuite/i7-hmmbuild-fragments.pl usr/share/HMMER/testsuite/i8-nonresidues.pl usr/share/HMMER/testsuite/i9-optional-annotation.pl usr/share/HMMER/testsuite/iss159-nhmmer-overlap.py usr/share/HMMER/testsuite/minifam usr/share/HMMER/testsuite/parse_test_results.py usr/share/HMMER/testsuite/rndseq400-10.fa usr/share/HMMER/testsuite/testsuite.sqc usr/share/HMMER/tutorial/ usr/share/HMMER/tutorial/7LESS_DROME usr/share/HMMER/tutorial/HBB_HUMAN usr/share/HMMER/tutorial/MADE1.hmm usr/share/HMMER/tutorial/MADE1.sto usr/share/HMMER/tutorial/Pkinase.hmm usr/share/HMMER/tutorial/Pkinase.sto usr/share/HMMER/tutorial/dna_target.fa usr/share/HMMER/tutorial/fn3.hmm usr/share/HMMER/tutorial/fn3.sto usr/share/HMMER/tutorial/globins4.hmm usr/share/HMMER/tutorial/globins4.sto usr/share/HMMER/tutorial/globins45.fa Slackware package /usr/src/slapt-src/academic/HMMER/HMMER-3.3.2-i586-1salix15.0.txz created. Installing package HMMER-3.3.2-i586-1salix15.0... | HMMER (Biosequence analysis using profile hidden Markov models) | | HMMER is used for searching sequence databases for sequence | homologs, and for making sequence alignments. It implements | methods using probabilistic models called profile hidden Markov | models (profile HMMs). | | Home: http://hmmer.org/ | Publications: http://hmmer.org/publications.html | | | |