The following packages will be installed: mrbayes Fetching README... 0%100%100%100%100%100%Done Fetching References... 0%100%100%100%100%100%Done Fetching mrbayes.SlackBuild... 0%100%100%100%100%100%Done Fetching mrbayes.info... 0%100%100%100%100%100%Done Fetching slack-desc... 0%100%100%100%100%100%Done MrBayes-3.2.7a/ MrBayes-3.2.7a/.github/ MrBayes-3.2.7a/.github/ISSUE_TEMPLATE/ MrBayes-3.2.7a/.github/ISSUE_TEMPLATE/bug-report.md MrBayes-3.2.7a/.github/ISSUE_TEMPLATE/internal-issue.md MrBayes-3.2.7a/.github/ISSUE_TEMPLATE/support-request.md MrBayes-3.2.7a/.gitignore MrBayes-3.2.7a/COPYING MrBayes-3.2.7a/INSTALL MrBayes-3.2.7a/Makefile.am MrBayes-3.2.7a/Makefile.in MrBayes-3.2.7a/NEWS MrBayes-3.2.7a/README MrBayes-3.2.7a/TODO MrBayes-3.2.7a/aclocal.m4 MrBayes-3.2.7a/am-aux/ MrBayes-3.2.7a/am-aux/compile MrBayes-3.2.7a/am-aux/config.guess MrBayes-3.2.7a/am-aux/config.sub MrBayes-3.2.7a/am-aux/depcomp MrBayes-3.2.7a/am-aux/install-sh MrBayes-3.2.7a/am-aux/missing MrBayes-3.2.7a/am-macros/ MrBayes-3.2.7a/am-macros/ax_reset_header_cache.m4 MrBayes-3.2.7a/configure MrBayes-3.2.7a/configure.ac MrBayes-3.2.7a/doc/ MrBayes-3.2.7a/doc/Makefile.am MrBayes-3.2.7a/doc/Makefile.in MrBayes-3.2.7a/doc/manual/ MrBayes-3.2.7a/doc/manual/Makefile.am MrBayes-3.2.7a/doc/manual/Makefile.in MrBayes-3.2.7a/doc/manual/Manual_MrBayes_v3.2.pdf MrBayes-3.2.7a/doc/manual/src/ MrBayes-3.2.7a/doc/manual/src/Appendix_Fig1.pdf MrBayes-3.2.7a/doc/manual/src/Appendix_Fig2.pdf MrBayes-3.2.7a/doc/manual/src/Appendix_Fig3.pdf MrBayes-3.2.7a/doc/manual/src/Manual_MrBayes_v3.2.tex MrBayes-3.2.7a/doc/manual/src/StatisticalMethods_Chapter.tex MrBayes-3.2.7a/doc/manual/src/bayes.bib MrBayes-3.2.7a/doc/manual/src/sysbio.bst MrBayes-3.2.7a/doc/manual/src/wiki2latex.rb MrBayes-3.2.7a/doc/tutorial/ MrBayes-3.2.7a/doc/tutorial/MBDating.pdf MrBayes-3.2.7a/doc/tutorial/Makefile.am MrBayes-3.2.7a/doc/tutorial/Makefile.in MrBayes-3.2.7a/doc/tutorial/hym.nex MrBayes-3.2.7a/doc/tutorial/src/ MrBayes-3.2.7a/doc/tutorial/src/MBDating.tex MrBayes-3.2.7a/doc/tutorial/src/figures/ MrBayes-3.2.7a/doc/tutorial/src/figures/ccby.pdf MrBayes-3.2.7a/doc/tutorial/src/figures/clockr.pdf MrBayes-3.2.7a/doc/tutorial/src/figures/cltree.pdf MrBayes-3.2.7a/doc/tutorial/src/figures/distribution.r MrBayes-3.2.7a/doc/tutorial/src/figures/fbdtree.pdf MrBayes-3.2.7a/doc/tutorial/src/figures/gamdir.pdf MrBayes-3.2.7a/doc/tutorial/src/figures/gamma.pdf MrBayes-3.2.7a/doc/tutorial/src/figures/nctree.pdf MrBayes-3.2.7a/doc/tutorial/src/figures/nodecali.pdf MrBayes-3.2.7a/doc/tutorial/src/figures/relaxcl.pdf MrBayes-3.2.7a/doc/tutorial/src/figures/treeage.pdf MrBayes-3.2.7a/doc/tutorial/src/master_refs.bib MrBayes-3.2.7a/doc/tutorial/src/sysbio.bst MrBayes-3.2.7a/examples/ MrBayes-3.2.7a/examples/Makefile.am MrBayes-3.2.7a/examples/Makefile.in MrBayes-3.2.7a/examples/avian_ovomucoids.nex MrBayes-3.2.7a/examples/codon.nex MrBayes-3.2.7a/examples/cynmix.nex MrBayes-3.2.7a/examples/finch.nex MrBayes-3.2.7a/examples/hymfossil.nex MrBayes-3.2.7a/examples/primates.nex MrBayes-3.2.7a/examples/replicase.nex MrBayes-3.2.7a/examples/sceloporus.nex MrBayes-3.2.7a/src/ MrBayes-3.2.7a/src/Makefile.am MrBayes-3.2.7a/src/Makefile.in MrBayes-3.2.7a/src/bayes.c MrBayes-3.2.7a/src/bayes.h MrBayes-3.2.7a/src/best.c MrBayes-3.2.7a/src/best.h MrBayes-3.2.7a/src/command.c MrBayes-3.2.7a/src/command.h MrBayes-3.2.7a/src/config.h.in MrBayes-3.2.7a/src/likelihood.c MrBayes-3.2.7a/src/likelihood.h MrBayes-3.2.7a/src/mbbeagle.c MrBayes-3.2.7a/src/mbbeagle.h MrBayes-3.2.7a/src/mcmc.c MrBayes-3.2.7a/src/mcmc.h MrBayes-3.2.7a/src/model.c MrBayes-3.2.7a/src/model.h MrBayes-3.2.7a/src/proposal.c MrBayes-3.2.7a/src/proposal.h MrBayes-3.2.7a/src/sumpt.c MrBayes-3.2.7a/src/sumpt.h MrBayes-3.2.7a/src/utils.c MrBayes-3.2.7a/src/utils.h checking for a BSD-compatible install... /usr/bin/ginstall -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... i586-slackware-linux-gnu checking host system type... i586-slackware-linux-gnu checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for pdflatex... /usr/bin/pdflatex checking for bibtex... /usr/bin/bibtex checking for style of include used by make... GNU checking whether to compile using MPI... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking for sqrt in -lm... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for a readline compatible library... -lreadline checking readline.h usability... no checking readline.h presence... no checking for readline.h... no checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes checking whether readline supports history... yes checking history.h usability... no checking history.h presence... no checking for history.h... no checking readline/history.h usability... yes checking readline/history.h presence... yes checking for readline/history.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for memory.h... 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checking whether C compiler accepts -mavx2... yes checking whether AVX512-F is supported by the processor... no checking whether AVX512-CD is supported by the processor... no checking whether AVX512-PF is supported by the processor... no checking whether AVX512-ER is supported by the processor... no checking whether AVX512-VL is supported by the processor... no checking whether AVX512-BW is supported by the processor... no checking whether AVX512-DQ is supported by the processor... no checking whether AVX512-IFMA is supported by the processor... no checking whether AVX512-VBMI is supported by the processor... no checking for floor... yes checking for memset... yes checking for pow... yes checking for sqrt... yes checking for strchr... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/manual/Makefile config.status: creating doc/tutorial/Makefile config.status: creating examples/Makefile config.status: creating src/Makefile config.status: creating src/config.h config.status: executing depfiles commands Making all in src make[1]: Entering directory '/usr/src/slapt-src/academic/mrbayes/MrBayes-3.2.7a/src' make all-am make[2]: Entering directory '/usr/src/slapt-src/academic/mrbayes/MrBayes-3.2.7a/src' gcc -DHAVE_CONFIG_H -I. -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -maes -mavx -mfma -mavx2 -mrdrnd -mbmi -mbmi2 -madx -mmpx -mabm -O2 -march=i586 -mtune=i686 -MT mb-bayes.o -MD -MP -MF .deps/mb-bayes.Tpo -c -o mb-bayes.o `test -f 'bayes.c' || echo './'`bayes.c gcc: warning: switch ‘-mmpx’ is no longer supported mv -f .deps/mb-bayes.Tpo .deps/mb-bayes.Po gcc -DHAVE_CONFIG_H -I. -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -maes -mavx -mfma -mavx2 -mrdrnd -mbmi -mbmi2 -madx -mmpx -mabm -O2 -march=i586 -mtune=i686 -MT mb-best.o -MD -MP -MF .deps/mb-best.Tpo -c -o mb-best.o `test -f 'best.c' || echo './'`best.c gcc: warning: switch ‘-mmpx’ is no longer supported mv -f .deps/mb-best.Tpo .deps/mb-best.Po gcc -DHAVE_CONFIG_H -I. -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -maes -mavx -mfma -mavx2 -mrdrnd -mbmi -mbmi2 -madx -mmpx -mabm -O2 -march=i586 -mtune=i686 -MT mb-command.o -MD -MP -MF .deps/mb-command.Tpo -c -o mb-command.o `test -f 'command.c' || echo './'`command.c gcc: warning: switch ‘-mmpx’ is no longer supported mv -f .deps/mb-command.Tpo .deps/mb-command.Po gcc -DHAVE_CONFIG_H -I. -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -maes -mavx -mfma -mavx2 -mrdrnd -mbmi -mbmi2 -madx -mmpx -mabm -O2 -march=i586 -mtune=i686 -MT mb-likelihood.o -MD -MP -MF .deps/mb-likelihood.Tpo -c -o mb-likelihood.o `test -f 'likelihood.c' || echo './'`likelihood.c gcc: warning: switch ‘-mmpx’ is no longer supported mv -f .deps/mb-likelihood.Tpo .deps/mb-likelihood.Po gcc -DHAVE_CONFIG_H -I. -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -maes -mavx -mfma -mavx2 -mrdrnd -mbmi 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-DHAVE_CONFIG_H -I. -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -maes -mavx -mfma -mavx2 -mrdrnd -mbmi -mbmi2 -madx -mmpx -mabm -O2 -march=i586 -mtune=i686 -MT mb-proposal.o -MD -MP -MF .deps/mb-proposal.Tpo -c -o mb-proposal.o `test -f 'proposal.c' || echo './'`proposal.c gcc: warning: switch ‘-mmpx’ is no longer supported mv -f .deps/mb-proposal.Tpo .deps/mb-proposal.Po gcc -DHAVE_CONFIG_H -I. -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -maes -mavx -mfma -mavx2 -mrdrnd -mbmi -mbmi2 -madx -mmpx -mabm -O2 -march=i586 -mtune=i686 -MT mb-sumpt.o -MD -MP -MF .deps/mb-sumpt.Tpo -c -o mb-sumpt.o `test -f 'sumpt.c' || echo './'`sumpt.c gcc: warning: switch ‘-mmpx’ is no longer supported mv -f .deps/mb-sumpt.Tpo .deps/mb-sumpt.Po gcc -DHAVE_CONFIG_H -I. -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -maes -mavx -mfma -mavx2 -mrdrnd -mbmi -mbmi2 -madx -mmpx -mabm -O2 -march=i586 -mtune=i686 -MT mb-utils.o -MD -MP -MF .deps/mb-utils.Tpo -c -o mb-utils.o `test -f 'utils.c' || echo './'`utils.c gcc: warning: switch ‘-mmpx’ is no longer supported mv -f .deps/mb-utils.Tpo .deps/mb-utils.Po gcc -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -maes -mavx -mfma -mavx2 -mrdrnd -mbmi -mbmi2 -madx -mmpx -mabm -O2 -march=i586 -mtune=i686 -o mb mb-bayes.o mb-best.o mb-command.o mb-likelihood.o mb-mbbeagle.o mb-mcmc.o mb-model.o mb-proposal.o mb-sumpt.o mb-utils.o -lm -lreadline gcc: warning: switch ‘-mmpx’ is no longer supported make[2]: Leaving directory '/usr/src/slapt-src/academic/mrbayes/MrBayes-3.2.7a/src' make[1]: Leaving directory '/usr/src/slapt-src/academic/mrbayes/MrBayes-3.2.7a/src' Making all in doc make[1]: Entering directory '/usr/src/slapt-src/academic/mrbayes/MrBayes-3.2.7a/doc' Making all in manual make[2]: Entering directory '/usr/src/slapt-src/academic/mrbayes/MrBayes-3.2.7a/doc/manual' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/usr/src/slapt-src/academic/mrbayes/MrBayes-3.2.7a/doc/manual' Making all in tutorial 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Searching for symbolic links: No symbolic links were found, so we won't make an installation script. You can make your own later in ./install/doinst.sh and rebuild the package if you like. This next step is optional - you can set the directories in your package to some sane permissions. If any of the directories in your package have special permissions, then DO NOT reset them here! 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Installing package mrbayes-3.2.7a-i586-1salix15.0... | mrbayes (MrBayes: Bayesian Inference of Phylogeny) | | MrBayes is a program for Bayesian inference and model choice | across a wide range of phylogenetic and evolutionary models. | MrBayes uses Markov chain Monte Carlo (MCMC) methods to | estimate the posterior distribution of model parameters. | | Home: http://mrbayes.sourceforge.net/ | References: /usr/doc/mrbayes-3.2.6/References | | | |