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cistrome-cistrome-applications-harvard-63346832a22a/published-packages/NPS/lib/Bed.py inflating: cistrome-cistrome-applications-harvard-63346832a22a/published-packages/NPS/lib/FileIO.py inflating: cistrome-cistrome-applications-harvard-63346832a22a/published-packages/NPS/lib/Filters.py inflating: cistrome-cistrome-applications-harvard-63346832a22a/published-packages/NPS/lib/GenomeInfo.py inflating: cistrome-cistrome-applications-harvard-63346832a22a/published-packages/NPS/lib/PeakFinder.py inflating: cistrome-cistrome-applications-harvard-63346832a22a/published-packages/NPS/lib/Prob.py inflating: cistrome-cistrome-applications-harvard-63346832a22a/published-packages/NPS/lib/ReadParam.py inflating: cistrome-cistrome-applications-harvard-63346832a22a/published-packages/NPS/lib/WDen.py inflating: cistrome-cistrome-applications-harvard-63346832a22a/published-packages/NPS/lib/WaveletDenoise.py inflating: cistrome-cistrome-applications-harvard-63346832a22a/published-packages/NPS/lib/__init__.py inflating: cistrome-cistrome-applications-harvard-63346832a22a/published-packages/NPS/setup.py running build running build_py creating build creating build/lib creating build/lib/CistromeAP copying ./__init__.py -> build/lib/CistromeAP creating build/lib/CistromeAP/taolib copying ./taolib/__init__.py -> build/lib/CistromeAP/taolib creating build/lib/CistromeAP/jianlib copying ./jianlib/BwReader.py -> build/lib/CistromeAP/jianlib copying ./jianlib/R.py -> build/lib/CistromeAP/jianlib copying ./jianlib/__init__.py -> build/lib/CistromeAP/jianlib copying ./jianlib/corelib.py -> build/lib/CistromeAP/jianlib copying ./jianlib/graphics.py -> build/lib/CistromeAP/jianlib copying ./jianlib/inout.py -> build/lib/CistromeAP/jianlib copying ./jianlib/myfunc.py -> build/lib/CistromeAP/jianlib creating build/lib/CistromeAP/taolib/CoreLib copying ./taolib/CoreLib/__init__.py -> build/lib/CistromeAP/taolib/CoreLib creating build/lib/CistromeAP/taolib/CoreLib/DB copying ./taolib/CoreLib/DB/BinKeeper.py -> build/lib/CistromeAP/taolib/CoreLib/DB copying ./taolib/CoreLib/DB/DataCollection.py -> build/lib/CistromeAP/taolib/CoreLib/DB copying ./taolib/CoreLib/DB/NDD.py -> build/lib/CistromeAP/taolib/CoreLib/DB copying ./taolib/CoreLib/DB/__init__.py -> build/lib/CistromeAP/taolib/CoreLib/DB copying ./taolib/CoreLib/DB/dbMotif.py -> build/lib/CistromeAP/taolib/CoreLib/DB copying ./taolib/CoreLib/DB/dbRawChIP.py -> build/lib/CistromeAP/taolib/CoreLib/DB creating build/lib/CistromeAP/taolib/CoreLib/FeatIO copying ./taolib/CoreLib/FeatIO/Motif.py -> build/lib/CistromeAP/taolib/CoreLib/FeatIO copying ./taolib/CoreLib/FeatIO/__init__.py -> build/lib/CistromeAP/taolib/CoreLib/FeatIO creating build/lib/CistromeAP/taolib/CoreLib/BasicStat copying ./taolib/CoreLib/BasicStat/Func.py -> build/lib/CistromeAP/taolib/CoreLib/BasicStat copying ./taolib/CoreLib/BasicStat/Overlap.py -> build/lib/CistromeAP/taolib/CoreLib/BasicStat copying ./taolib/CoreLib/BasicStat/Prob.py -> build/lib/CistromeAP/taolib/CoreLib/BasicStat copying ./taolib/CoreLib/BasicStat/__init__.py -> build/lib/CistromeAP/taolib/CoreLib/BasicStat creating build/lib/CistromeAP/taolib/CoreLib/WWW copying ./taolib/CoreLib/WWW/GEO.py -> build/lib/CistromeAP/taolib/CoreLib/WWW copying ./taolib/CoreLib/WWW/Search.py -> build/lib/CistromeAP/taolib/CoreLib/WWW copying ./taolib/CoreLib/WWW/__init__.py -> build/lib/CistromeAP/taolib/CoreLib/WWW creating build/lib/CistromeAP/taolib/CoreLib/Parser copying ./taolib/CoreLib/Parser/BedIO.py -> build/lib/CistromeAP/taolib/CoreLib/Parser copying ./taolib/CoreLib/Parser/MotifScan.py -> build/lib/CistromeAP/taolib/CoreLib/Parser copying ./taolib/CoreLib/Parser/TagIO.py -> build/lib/CistromeAP/taolib/CoreLib/Parser copying ./taolib/CoreLib/Parser/WiggleIO.py -> build/lib/CistromeAP/taolib/CoreLib/Parser copying ./taolib/CoreLib/Parser/XLSIO.py -> build/lib/CistromeAP/taolib/CoreLib/Parser copying ./taolib/CoreLib/Parser/__init__.py -> build/lib/CistromeAP/taolib/CoreLib/Parser creating build/lib/CistromeAP/taolib/CoreLib/SeqIO copying ./taolib/CoreLib/SeqIO/__init__.py -> build/lib/CistromeAP/taolib/CoreLib/SeqIO creating build/lib/CistromeAP/taolib/CoreLib/BinKeeper copying ./taolib/CoreLib/BinKeeper/__init__.py -> build/lib/CistromeAP/taolib/CoreLib/BinKeeper creating build/lib/CistromeAP/taolib/CoreLib/Algorithm copying ./taolib/CoreLib/Algorithm/BWT.py -> build/lib/CistromeAP/taolib/CoreLib/Algorithm copying ./taolib/CoreLib/Algorithm/__init__.py -> build/lib/CistromeAP/taolib/CoreLib/Algorithm running build_scripts creating build/scripts-2.7 copying and adjusting Scripts/bed_correlation.py -> build/scripts-2.7 copying and adjusting Scripts/conservation_plot.py -> build/scripts-2.7 copying and adjusting Scripts/count_probes_in_peaks.py -> build/scripts-2.7 copying and adjusting Scripts/count_probes_in_ranges.py -> build/scripts-2.7 copying and adjusting Scripts/drawBED.py -> build/scripts-2.7 copying and adjusting Scripts/fq2fa.py -> build/scripts-2.7 copying and adjusting Scripts/naive_call_peaks.py -> build/scripts-2.7 copying and adjusting Scripts/qc_chIP_peak.py -> build/scripts-2.7 copying and adjusting Scripts/qc_chIP_whole.py -> build/scripts-2.7 copying and adjusting Scripts/randPos -> build/scripts-2.7 copying and adjusting Scripts/wig_call_peaks2 -> build/scripts-2.7 copying and adjusting Scripts/wig_call_peaks.py -> build/scripts-2.7 copying and adjusting Scripts/wig_correlation_in_bed_file.py -> build/scripts-2.7 copying and adjusting Scripts/wig_correlation.py -> build/scripts-2.7 copying and adjusting Scripts/wig_extract_chrom.py -> build/scripts-2.7 copying and adjusting Scripts/wiggle_reformat.py -> build/scripts-2.7 copying and adjusting Scripts/xyz2image.py -> build/scripts-2.7 copying and adjusting Scripts/convert_ids.py -> build/scripts-2.7 copying and adjusting Scripts/bedToWig2.py -> build/scripts-2.7 copying and adjusting Scripts/wigToBed.py -> build/scripts-2.7 copying and adjusting Scripts/wigLiftover.py -> build/scripts-2.7 copying and adjusting Scripts/standardize_wig.py -> build/scripts-2.7 copying and adjusting Scripts/venn_diagram.py -> build/scripts-2.7 copying and adjusting Scripts/qc_chIP_peakBW.py -> build/scripts-2.7 copying and adjusting Scripts/prof_sort.py -> build/scripts-2.7 copying and adjusting Scripts/PCGA.py -> build/scripts-2.7 copying and adjusting Scripts/heatmapr -> build/scripts-2.7 copying and adjusting Scripts/bigwig_correlation_in_bed_file.py -> build/scripts-2.7 copying and adjusting Scripts/bigwig_correlation.py -> build/scripts-2.7 copying Scripts/RegPotential.py -> build/scripts-2.7 copying and adjusting Scripts/expressPkgr.py -> build/scripts-2.7 changing mode of build/scripts-2.7/bed_correlation.py from 644 to 755 changing mode of build/scripts-2.7/conservation_plot.py from 644 to 755 changing mode of build/scripts-2.7/count_probes_in_peaks.py from 644 to 755 changing mode of build/scripts-2.7/count_probes_in_ranges.py from 644 to 755 changing mode of build/scripts-2.7/drawBED.py from 644 to 755 changing mode of build/scripts-2.7/fq2fa.py from 644 to 755 changing mode of build/scripts-2.7/naive_call_peaks.py from 644 to 755 changing mode of build/scripts-2.7/qc_chIP_peak.py from 644 to 755 changing mode of build/scripts-2.7/qc_chIP_whole.py from 644 to 755 changing mode of build/scripts-2.7/randPos from 644 to 755 changing mode of build/scripts-2.7/wig_call_peaks2 from 644 to 755 changing mode of build/scripts-2.7/wig_call_peaks.py from 644 to 755 changing mode of build/scripts-2.7/wig_correlation_in_bed_file.py from 644 to 755 changing mode of build/scripts-2.7/wig_correlation.py from 644 to 755 changing mode of build/scripts-2.7/wig_extract_chrom.py from 644 to 755 changing mode of build/scripts-2.7/wiggle_reformat.py from 644 to 755 changing mode of build/scripts-2.7/xyz2image.py from 644 to 755 changing mode of build/scripts-2.7/convert_ids.py from 644 to 755 changing mode of build/scripts-2.7/bedToWig2.py from 644 to 755 changing mode of build/scripts-2.7/wigToBed.py from 644 to 755 changing mode of build/scripts-2.7/wigLiftover.py from 644 to 755 changing mode of build/scripts-2.7/standardize_wig.py from 644 to 755 changing mode of build/scripts-2.7/venn_diagram.py from 644 to 755 changing mode of build/scripts-2.7/qc_chIP_peakBW.py from 644 to 755 changing mode of build/scripts-2.7/prof_sort.py from 644 to 755 changing mode of build/scripts-2.7/PCGA.py from 644 to 755 changing mode of build/scripts-2.7/heatmapr from 644 to 755 changing mode of build/scripts-2.7/bigwig_correlation_in_bed_file.py from 644 to 755 changing mode of build/scripts-2.7/bigwig_correlation.py from 644 to 755 changing mode of build/scripts-2.7/expressPkgr.py from 644 to 755 running install running build running build_py running build_scripts running install_lib creating /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr creating /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64 creating /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7 creating /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages creating /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP copying build/lib/CistromeAP/__init__.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP creating /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib copying build/lib/CistromeAP/taolib/__init__.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib creating /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib copying build/lib/CistromeAP/taolib/CoreLib/__init__.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib creating /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/DB copying build/lib/CistromeAP/taolib/CoreLib/DB/BinKeeper.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/DB copying build/lib/CistromeAP/taolib/CoreLib/DB/DataCollection.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/DB copying build/lib/CistromeAP/taolib/CoreLib/DB/NDD.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/DB copying build/lib/CistromeAP/taolib/CoreLib/DB/__init__.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/DB copying build/lib/CistromeAP/taolib/CoreLib/DB/dbMotif.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/DB copying build/lib/CistromeAP/taolib/CoreLib/DB/dbRawChIP.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/DB creating /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/FeatIO copying build/lib/CistromeAP/taolib/CoreLib/FeatIO/Motif.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/FeatIO copying build/lib/CistromeAP/taolib/CoreLib/FeatIO/__init__.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/FeatIO creating /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/BasicStat copying build/lib/CistromeAP/taolib/CoreLib/BasicStat/Func.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/BasicStat copying build/lib/CistromeAP/taolib/CoreLib/BasicStat/Overlap.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/BasicStat copying build/lib/CistromeAP/taolib/CoreLib/BasicStat/Prob.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/BasicStat copying build/lib/CistromeAP/taolib/CoreLib/BasicStat/__init__.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/BasicStat creating /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/WWW copying build/lib/CistromeAP/taolib/CoreLib/WWW/GEO.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/WWW copying build/lib/CistromeAP/taolib/CoreLib/WWW/Search.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/WWW copying build/lib/CistromeAP/taolib/CoreLib/WWW/__init__.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/WWW creating /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/Parser copying build/lib/CistromeAP/taolib/CoreLib/Parser/BedIO.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/Parser copying build/lib/CistromeAP/taolib/CoreLib/Parser/MotifScan.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/Parser copying build/lib/CistromeAP/taolib/CoreLib/Parser/TagIO.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/Parser copying build/lib/CistromeAP/taolib/CoreLib/Parser/WiggleIO.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/Parser copying build/lib/CistromeAP/taolib/CoreLib/Parser/XLSIO.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/Parser copying build/lib/CistromeAP/taolib/CoreLib/Parser/__init__.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/Parser creating /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/SeqIO copying build/lib/CistromeAP/taolib/CoreLib/SeqIO/__init__.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/SeqIO creating /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/BinKeeper copying build/lib/CistromeAP/taolib/CoreLib/BinKeeper/__init__.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/BinKeeper creating /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/Algorithm copying build/lib/CistromeAP/taolib/CoreLib/Algorithm/BWT.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/Algorithm copying build/lib/CistromeAP/taolib/CoreLib/Algorithm/__init__.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/Algorithm creating /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/jianlib copying build/lib/CistromeAP/jianlib/BwReader.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/jianlib copying build/lib/CistromeAP/jianlib/R.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/jianlib copying build/lib/CistromeAP/jianlib/__init__.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/jianlib copying build/lib/CistromeAP/jianlib/corelib.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/jianlib copying build/lib/CistromeAP/jianlib/graphics.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/jianlib copying build/lib/CistromeAP/jianlib/inout.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/jianlib copying build/lib/CistromeAP/jianlib/myfunc.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/jianlib byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/__init__.py to __init__.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/__init__.py to __init__.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/__init__.py to __init__.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/DB/BinKeeper.py to BinKeeper.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/DB/DataCollection.py to DataCollection.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/DB/NDD.py to NDD.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/DB/__init__.py to __init__.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/DB/dbMotif.py to dbMotif.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/DB/dbRawChIP.py to dbRawChIP.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/FeatIO/Motif.py to Motif.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/FeatIO/__init__.py to __init__.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/BasicStat/Func.py to Func.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/BasicStat/Overlap.py to Overlap.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/BasicStat/Prob.py to Prob.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/BasicStat/__init__.py to __init__.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/WWW/GEO.py to GEO.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/WWW/Search.py to Search.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/WWW/__init__.py to __init__.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/Parser/BedIO.py to BedIO.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/Parser/MotifScan.py to MotifScan.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/Parser/TagIO.py to TagIO.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/Parser/WiggleIO.py to WiggleIO.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/Parser/XLSIO.py to XLSIO.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/Parser/__init__.py to __init__.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/SeqIO/__init__.py to __init__.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/BinKeeper/__init__.py to __init__.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/Algorithm/BWT.py to BWT.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/Algorithm/__init__.py to __init__.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/jianlib/BwReader.py to BwReader.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/jianlib/R.py to R.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/jianlib/__init__.py to __init__.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/jianlib/corelib.py to corelib.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/jianlib/graphics.py to graphics.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/jianlib/inout.py to inout.pyc byte-compiling /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/CistromeAP/jianlib/myfunc.py to myfunc.pyc running install_scripts creating /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/bed_correlation.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/conservation_plot.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/count_probes_in_peaks.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/count_probes_in_ranges.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/drawBED.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/fq2fa.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/naive_call_peaks.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/qc_chIP_peak.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/qc_chIP_whole.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/randPos -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/wig_call_peaks2 -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/wig_call_peaks.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/wig_correlation_in_bed_file.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/wig_correlation.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/wig_extract_chrom.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/wiggle_reformat.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/xyz2image.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/convert_ids.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/bedToWig2.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/wigToBed.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/wigLiftover.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/standardize_wig.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/venn_diagram.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/qc_chIP_peakBW.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/prof_sort.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/PCGA.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/heatmapr -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/bigwig_correlation_in_bed_file.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/bigwig_correlation.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/RegPotential.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin copying build/scripts-2.7/expressPkgr.py -> /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/bed_correlation.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/conservation_plot.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/count_probes_in_peaks.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/count_probes_in_ranges.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/drawBED.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/fq2fa.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/naive_call_peaks.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/qc_chIP_peak.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/qc_chIP_whole.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/randPos to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/wig_call_peaks2 to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/wig_call_peaks.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/wig_correlation_in_bed_file.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/wig_correlation.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/wig_extract_chrom.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/wiggle_reformat.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/xyz2image.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/convert_ids.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/bedToWig2.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/wigToBed.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/wigLiftover.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/standardize_wig.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/venn_diagram.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/qc_chIP_peakBW.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/prof_sort.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/PCGA.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/heatmapr to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/bigwig_correlation_in_bed_file.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/bigwig_correlation.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/RegPotential.py to 755 changing mode of /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/bin/expressPkgr.py to 755 running install_egg_info Writing /usr/src/slapt-src/academic/cistrome-extra/package-cistrome-extra/usr/lib64/python2.7/site-packages/cistrome_extra_apps-1.0-py2.7.egg-info Slackware package maker, version 3.14159265. Searching for symbolic links: usr/bin/peak2gene.py PCGA.py Making symbolic link creation script: ( cd usr/bin ; rm -rf peak2gene.py ) ( cd usr/bin ; ln -sf PCGA.py peak2gene.py ) It is recommended that you make these lines your new installation script. Would you like to make this stuff the install script for this package and remove the symbolic links ([y]es, [n]o)? y Removing symbolic links: removed './usr/bin/peak2gene.py' Creating your new ./install/doinst.sh... This next step is optional - you can set the directories in your package to some sane permissions. If any of the directories in your package have special permissions, then DO NOT reset them here! Would you like to reset all directory permissions to 755 (drwxr-xr-x) and directory ownerships to root.root ([y]es, [n]o)? n Creating Slackware package: /usr/src/slapt-src/academic/cistrome-extra/cistrome-extra-git_20170829_6334683-x86_64-1salix15.0.txz WARNING: zero length file usr/lib64/python2.7/site-packages/CistromeAP/__init__.py WARNING: zero length file usr/lib64/python2.7/site-packages/CistromeAP/taolib/__init__.py WARNING: zero length file usr/lib64/python2.7/site-packages/CistromeAP/taolib/CoreLib/Algorithm/__init__.py WARNING: zero length file usr/lib64/python2.7/site-packages/CistromeAP/jianlib/__init__.py Slackware package /usr/src/slapt-src/academic/cistrome-extra/cistrome-extra-git_20170829_6334683-x86_64-1salix15.0.txz created. Installing package cistrome-extra-git_20170829_6334683-x86_64-1salix15.0... | cistrome-extra (Cistrome Applications Harvard extra apps) | | This is cistrome-extra, part of the Cistrome-Applications-Harvard | project. | | | | | | | | |