CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. 100%100%100%100%100%Done Fetching slack-desc... 0%100%100%100%100%100%Done diamond-0.9.36/ diamond-0.9.36/.dockerignore diamond-0.9.36/.gitattributes diamond-0.9.36/.gitignore diamond-0.9.36/.travis.yml diamond-0.9.36/CMakeLists.txt diamond-0.9.36/Dockerfile diamond-0.9.36/LICENSE diamond-0.9.36/README.md diamond-0.9.36/build_simple.sh diamond-0.9.36/src/ diamond-0.9.36/src/ChangeLog diamond-0.9.36/src/align/ diamond-0.9.36/src/align/align.cpp diamond-0.9.36/src/align/align.h diamond-0.9.36/src/align/culling.cpp diamond-0.9.36/src/align/extend.cpp diamond-0.9.36/src/align/extend.h diamond-0.9.36/src/align/gapped.cpp diamond-0.9.36/src/align/gapped_filter.cpp diamond-0.9.36/src/align/legacy/ diamond-0.9.36/src/align/legacy/banded_swipe_pipeline.cpp diamond-0.9.36/src/align/legacy/query_mapper.cpp diamond-0.9.36/src/align/legacy/query_mapper.h 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diamond-0.9.36/src/util/tantan.h diamond-0.9.36/src/util/task_queue.h diamond-0.9.36/src/util/text_buffer.h diamond-0.9.36/src/util/util.cpp diamond-0.9.36/src/util/util.h -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.12") -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Configuring done -- Generating done -- Build files have been written to: /usr/src/slapt-src/academic/diamond/diamond-0.9.36/build [ 1%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/dp/swipe/banded_3frame_swipe.cpp.o [ 1%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/dp/swipe/swipe.cpp.o [ 2%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/dp/swipe/banded_swipe.cpp.o [ 3%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/search/collision.cpp.o [ 4%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/search/stage1.cpp.o [ 5%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/search/stage2.cpp.o [ 5%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/tools/benchmark.cpp.o [ 6%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/dp/swipe/swipe_wrapper.cpp.o [ 7%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/util/tantan.cpp.o [ 8%] Building CXX object 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Building CXX object CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o [ 17%] Built target arch_generic [ 17%] Building CXX object CMakeFiles/arch_avx2.dir/src/dp/swipe/banded_3frame_swipe.cpp.o [ 18%] Building CXX object CMakeFiles/arch_avx2.dir/src/dp/swipe/swipe.cpp.o [ 19%] Building CXX object CMakeFiles/arch_avx2.dir/src/dp/swipe/banded_swipe.cpp.o [ 20%] Building CXX object CMakeFiles/arch_avx2.dir/src/search/collision.cpp.o [ 20%] Building CXX object CMakeFiles/arch_avx2.dir/src/search/stage1.cpp.o [ 21%] Building CXX object CMakeFiles/arch_avx2.dir/src/search/stage2.cpp.o [ 22%] Building CXX object CMakeFiles/arch_avx2.dir/src/tools/benchmark.cpp.o [ 23%] Building CXX object CMakeFiles/arch_avx2.dir/src/dp/swipe/swipe_wrapper.cpp.o [ 24%] Building CXX object CMakeFiles/arch_avx2.dir/src/util/tantan.cpp.o [ 24%] Building CXX object CMakeFiles/arch_avx2.dir/src/dp/scan_diags.cpp.o [ 25%] Building CXX object CMakeFiles/arch_avx2.dir/src/dp/ungapped_simd.cpp.o [ 25%] Built target arch_avx2 [ 26%] Building CXX object CMakeFiles/diamond.dir/src/run/main.cpp.o [ 27%] Building CXX object CMakeFiles/diamond.dir/src/basic/config.cpp.o [ 28%] Building CXX object CMakeFiles/diamond.dir/src/basic/score_matrix.cpp.o [ 29%] Building CXX object CMakeFiles/diamond.dir/src/data/queries.cpp.o [ 29%] Building CXX object CMakeFiles/diamond.dir/src/data/reference.cpp.o /usr/src/slapt-src/academic/diamond/diamond-0.9.36/src/data/reference.cpp: In static member function ‘static bool DatabaseFile::is_diamond_db(const string&)’: /usr/src/slapt-src/academic/diamond/diamond-0.9.36/src/data/reference.cpp:459:16: warning: catching polymorphic type ‘struct EndOfStream’ by value [-Wcatch-value=] 459 | catch (EndOfStream) {} | ^~~~~~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 30%] Building CXX object CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o [ 31%] Building CXX 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diamond [100%] Built target diamond Consolidate compiler generated dependencies of target arch_sse4_1 [ 8%] Built target arch_sse4_1 Consolidate compiler generated dependencies of target arch_generic [ 17%] Built target arch_generic Consolidate compiler generated dependencies of target arch_avx2 [ 25%] Built target arch_avx2 Consolidate compiler generated dependencies of target diamond [100%] Built target diamond Install the project... -- Install configuration: "Release" -- Installing: /usr/src/slapt-src/academic/diamond/package-diamond/usr/bin/diamond Slackware package maker, version 3.14159265. Searching for symbolic links: No symbolic links were found, so we won't make an installation script. You can make your own later in ./install/doinst.sh and rebuild the package if you like. This next step is optional - you can set the directories in your package to some sane permissions. If any of the directories in your package have special permissions, then DO NOT reset them here! Would you like to reset all directory permissions to 755 (drwxr-xr-x) and directory ownerships to root.root ([y]es, [n]o)? n Creating Slackware package: /usr/src/slapt-src/academic/diamond/diamond-0.9.36-x86_64-1salix15.0.txz ./ install/ install/slack-desc usr/ usr/bin/ usr/bin/diamond usr/doc/ usr/doc/diamond-0.9.36/ usr/doc/diamond-0.9.36/ChangeLog usr/doc/diamond-0.9.36/LICENSE usr/doc/diamond-0.9.36/README.md usr/doc/diamond-0.9.36/References usr/doc/diamond-0.9.36/diamond.SlackBuild Slackware package /usr/src/slapt-src/academic/diamond/diamond-0.9.36-x86_64-1salix15.0.txz created. Installing package diamond-0.9.36-x86_64-1salix15.0... | diamond (A sequence aligner for protein and translated DNA) | | DIAMOND is a sequence aligner for protein and translated DNA | searches, designed for high performance analysis of big sequence | data. The key features are: | | 1) 500x-20,000x speed of BLAST | 2) Frameshift alignments for long read analysis. | 3) Low resource requirements | 4) Various output formats | | |